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In the Reference Data Explorer or Electrical Index expand the hierarchy and find the custom folder you want to delete.
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Right-select the folder you want to delete and on the shortcut menu, select Delete Custom Folder.
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At the prompt, select Yes.
Deleting a custom folder does not remove the custom folder contents from the database. These items can still be found in the All Items folder. The All Items folder is also deleted, but not its contents, if the deleted custom folder is the only custom folder in the parent folder.